| 108 | Shoaib Malik | Pakistan v India at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 107* | Yuvraj Singh | India v Pakistan at Karachi, 5th ODI, 19/02/2006 [2333] |
| 101 | Salman Butt | Pakistan v India at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 100 | SR Tendulkar | India v Pakistan at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 95 | Shoaib Malik | Pakistan v India at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 95 | SR Tendulkar | India v Pakistan at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 90 | Shoaib Malik | Pakistan v India at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 82* | Yuvraj Singh | India v Pakistan at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 81 | Younis Khan | Pakistan v India at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 79* | Yuvraj Singh | India v Pakistan at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 77* | MS Dhoni | India v Pakistan at Karachi, 5th ODI, 19/02/2006 [2333] |
| 74* | Younis Khan | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
| 72* | MS Dhoni | India v Pakistan at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 68 | MS Dhoni | India v Pakistan at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 67 | V Sehwag | India v Pakistan at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 67 | Mohammad Yousuf | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
| 65 | IK Pathan | India v Pakistan at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 64* | Abdul Razzaq | Pakistan v India at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 59 | R Dravid | India v Pakistan at Multan, 4th ODI, 16/02/2006 [2331] |
| 56 | R Dravid | India v Pakistan at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 50 | R Dravid | India v Pakistan at Karachi, 5th ODI, 19/02/2006 [2333] |
| 49 | Inzamam-ul-Haq | Pakistan v India at Multan, 4th ODI, 16/02/2006 [2331] |
| 42 | SR Tendulkar | India v Pakistan at Rawalpindi, 2nd ODI, 11/02/2006 [2327] |
| 39 | Yuvraj Singh | India v Pakistan at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 38 | G Gambhir | India v Pakistan at Karachi, 5th ODI, 19/02/2006 [2333] |
| 37 | Yuvraj Singh | India v Pakistan at Multan, 4th ODI, 16/02/2006 [2331] |
| 35* | SK Raina | India v Pakistan at Multan, 4th ODI, 16/02/2006 [2331] |
| 34 | Kamran Akmal | Pakistan v India at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 25 | Kamran Akmal | Pakistan v India at Peshawar, 1st ODI, 06/02/2006 [2324] |
| 25 | Mohammad Yousuf | Pakistan v India at Multan, 4th ODI, 16/02/2006 [2331] |
| 25 | Kamran Akmal | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
| 24 | Imran Farhat | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
| 24 | Abdul Razzaq | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
| 22 | R Dravid | India v Pakistan at Lahore, 3rd ODI, 13/02/2006 [2329] |
| 21 | G Gambhir | India v Pakistan at Multan, 4th ODI, 16/02/2006 [2331] |
| 21 | Inzamam-ul-Haq | Pakistan v India at Karachi, 5th ODI, 19/02/2006 [2333] |
